Variant report

Variant	rs59538449
Chromosome Location	chr3:116117849-116117850
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12106881	1.00[EUR][1000 genomes]
rs12107699	1.00[EUR][1000 genomes]
rs2116310	1.00[EUR][1000 genomes]
rs2116311	1.00[EUR][1000 genomes]
rs58306572	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58427084	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59305024	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60202396	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6769316	1.00[EUR][1000 genomes]
rs6769537	1.00[EUR][1000 genomes]
rs6807671	1.00[EUR][1000 genomes]
rs72947953	1.00[EUR][1000 genomes]
rs72947956	1.00[EUR][1000 genomes]
rs72947967	1.00[EUR][1000 genomes]
rs73859277	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757005	chr3:116085678-116121948	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv2759170	chr3:116085678-116121948	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116103000-116142000	Weak transcription	Fetal Lung	lung
2	chr3:116109200-116118600	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:116109600-116118400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:116112600-116132800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:116113800-116127600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:116115200-116119200	Enhancers	Brain Anterior Caudate	brain
7	chr3:116116600-116119000	Enhancers	Brain Substantia Nigra	brain
8	chr3:116117000-116120400	Enhancers	Brain Angular Gyrus	brain
9	chr3:116117200-116119800	Enhancers	Brain Hippocampus Middle	brain
10	chr3:116117400-116118600	Enhancers	Brain Cingulate Gyrus	brain
11	chr3:116117600-116124000	Weak transcription	Brain Germinal Matrix	brain
12	chr3:116117800-116118200	Weak transcription	Brain Inferior Temporal Lobe	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links