Variant report

Variant	rs12106881
Chromosome Location	chr3:115999280-115999281
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12107019	1.00[ASN][1000 genomes]
rs12107026	1.00[ASN][1000 genomes]
rs2116310	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2116311	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58306572	1.00[EUR][1000 genomes]
rs58427084	1.00[EUR][1000 genomes]
rs59305024	1.00[EUR][1000 genomes]
rs59538449	1.00[EUR][1000 genomes]
rs60202396	1.00[EUR][1000 genomes]
rs6807671	1.00[EUR][1000 genomes]
rs72947953	1.00[EUR][1000 genomes]
rs72947956	1.00[EUR][1000 genomes]
rs72947967	1.00[EUR][1000 genomes]
rs72947991	1.00[ASN][1000 genomes]
rs73858515	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv3957	chr3:115986950-116032625	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115985400-115999600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:115987400-116006200	Weak transcription	Brain Angular Gyrus	brain
3	chr3:115996600-115999400	Enhancers	Colon Smooth Muscle	Colon
4	chr3:115996800-115999400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr3:115997200-116017200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:115998200-115999600	Enhancers	Fetal Brain Female	brain
7	chr3:115998200-116006000	Weak transcription	Brain Germinal Matrix	brain
8	chr3:115999000-115999400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:115999000-115999600	Enhancers	Brain Cingulate Gyrus	brain
10	chr3:115999000-115999600	Flanking Active TSS	Brain Hippocampus Middle	brain
11	chr3:115999000-115999800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr3:115999000-115999800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr3:115999000-115999800	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr3:115999000-116000000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr3:115999000-116000200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:115999000-116000400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:115999000-116000800	Enhancers	Fetal Brain Male	brain
18	chr3:115999200-115999400	Enhancers	Rectal Smooth Muscle	rectum
19	chr3:115999200-115999600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr3:115999200-115999600	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr3:115999200-115999600	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr3:115999200-115999600	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr3:115999200-115999600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr3:115999200-115999600	Enhancers	Fetal Lung	lung
25	chr3:115999200-115999600	Active TSS	Stomach Smooth Muscle	stomach
26	chr3:115999200-115999800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr3:115999200-115999800	Flanking Active TSS	Brain Anterior Caudate	brain
28	chr3:115999200-115999800	Active TSS	Brain Substantia Nigra	brain

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