Variant report

Variant	rs59305024
Chromosome Location	chr3:116069638-116069639
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12106881	1.00[EUR][1000 genomes]
rs2116310	1.00[EUR][1000 genomes]
rs2116311	1.00[EUR][1000 genomes]
rs58306572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58427084	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59538449	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60202396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6807671	1.00[EUR][1000 genomes]
rs72947953	1.00[EUR][1000 genomes]
rs72947956	1.00[EUR][1000 genomes]
rs72947967	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116063600-116070400	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:116067800-116069800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:116067800-116069800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:116068000-116069800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:116069000-116069800	Enhancers	Brain Angular Gyrus	brain
6	chr3:116069000-116070400	Enhancers	Brain Cingulate Gyrus	brain
7	chr3:116069000-116071000	Enhancers	Brain Substantia Nigra	brain
8	chr3:116069200-116069800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:116069600-116070000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:116069600-116070200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:116069600-116070200	Enhancers	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links