Variant report

Variant	rs2116311
Chromosome Location	chr3:115997839-115997840
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12106881	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107019	1.00[ASN][1000 genomes]
rs12107026	1.00[ASN][1000 genomes]
rs2116310	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58306572	1.00[EUR][1000 genomes]
rs58427084	1.00[EUR][1000 genomes]
rs59305024	1.00[EUR][1000 genomes]
rs59538449	1.00[EUR][1000 genomes]
rs60202396	1.00[EUR][1000 genomes]
rs6807671	1.00[EUR][1000 genomes]
rs72947953	1.00[EUR][1000 genomes]
rs72947956	1.00[EUR][1000 genomes]
rs72947967	1.00[EUR][1000 genomes]
rs72947991	1.00[ASN][1000 genomes]
rs73858515	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv3957	chr3:115986950-116032625	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115985400-115999600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:115987400-116006200	Weak transcription	Brain Angular Gyrus	brain
3	chr3:115988000-115998200	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:115989200-115999000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:115990600-115998200	Weak transcription	Brain Substantia Nigra	brain
6	chr3:115992200-115999200	Weak transcription	Fetal Lung	lung
7	chr3:115995800-115999000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:115995800-115999000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:115996000-115999000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr3:115996000-115999000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr3:115996000-115999200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr3:115996000-115999200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr3:115996600-115999400	Enhancers	Colon Smooth Muscle	Colon
14	chr3:115996800-115999000	Enhancers	Rectal Smooth Muscle	rectum
15	chr3:115996800-115999400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr3:115997000-115998200	Enhancers	Brain Anterior Caudate	brain
17	chr3:115997000-115998200	Enhancers	Brain Cingulate Gyrus	brain
18	chr3:115997200-116017200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr3:115997400-115998200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr3:115997800-115998000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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