Variant report

Variant	rs68039803
Chromosome Location	chr10:110703443-110703444
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr10:110703327-110703580	HepG2	liver:	n/a	chr10:110703424-110703435 chr10:110703424-110703437 chr10:110703424-110703437
2	CEBPB	chr10:110703249-110703520	IMR90	lung:	n/a	chr10:110703424-110703435 chr10:110703424-110703437 chr10:110703424-110703437

Variant related genes	Relation type
RN7SKP278	TF binding region

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11591627	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11592183	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11592511	0.83[AMR][1000 genomes]
rs11594594	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11595986	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11596046	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11596191	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11596847	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11597293	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11597372	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17700240	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17700780	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17701356	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17770955	0.90[AMR][1000 genomes]
rs17778423	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17779136	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17779611	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4525159	0.96[EUR][1000 genomes]
rs56208412	0.83[AMR][1000 genomes]
rs66584978	0.83[AMR][1000 genomes]
rs66674244	0.83[AMR][1000 genomes]
rs66861789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7083281	0.83[AMR][1000 genomes]
rs7091974	0.83[AMR][1000 genomes]
rs72828101	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72828102	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72829903	0.83[EUR][1000 genomes]
rs72829904	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72829905	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72829906	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72829907	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72829908	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72829909	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72829910	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72829912	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72829914	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72829915	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72829916	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72829917	0.83[EUR][1000 genomes]
rs72829951	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72829991	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050244	chr10:110279647-110779693	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv917125	chr10:110425573-111119776	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv492162	chr10:110440656-111089721	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1067661	chr10:110440715-111089466	Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv529130	chr10:110440715-111089466	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	esv3429369	chr10:110454775-110753351	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	esv2750851	chr10:110503788-110905211	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv895993	chr10:110639267-110814528	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv895994	chr10:110702426-110982703	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv895995	chr10:110702426-111348202	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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