Variant report

Variant	rs72828102
Chromosome Location	chr10:110664049-110664050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10509879	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11591627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11592183	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11592511	0.80[EUR][1000 genomes]
rs11594594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11595986	0.92[AMR][1000 genomes]
rs11596046	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11596191	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11596847	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11597293	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11597372	0.92[AMR][1000 genomes]
rs17698048	0.83[EUR][1000 genomes]
rs17698729	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17698968	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17700240	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17700780	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17701356	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17770955	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17771704	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17778423	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17779136	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17779611	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34633864	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35274948	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4258310	0.85[EUR][1000 genomes]
rs4525159	0.82[EUR][1000 genomes]
rs59080228	0.82[EUR][1000 genomes]
rs66584978	0.80[EUR][1000 genomes]
rs66596379	0.80[EUR][1000 genomes]
rs66674244	0.82[EUR][1000 genomes]
rs66861789	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67837870	0.80[EUR][1000 genomes]
rs68039803	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7083281	0.80[EUR][1000 genomes]
rs7091974	0.80[EUR][1000 genomes]
rs72828047	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72828048	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72828090	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72828101	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72829903	0.97[EUR][1000 genomes]
rs72829904	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72829905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72829906	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72829907	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72829908	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72829909	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72829910	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72829912	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72829914	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72829915	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72829916	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72829917	0.98[EUR][1000 genomes]
rs72829951	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72829991	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73344746	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050244	chr10:110279647-110779693	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv917125	chr10:110425573-111119776	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv492162	chr10:110440656-111089721	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1067661	chr10:110440715-111089466	Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv529130	chr10:110440715-111089466	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	esv3429369	chr10:110454775-110753351	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	esv2750851	chr10:110503788-110905211	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv895993	chr10:110639267-110814528	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:110661200-110665800	Enhancers	Fetal Lung	lung
2	chr10:110661600-110666200	Enhancers	Fetal Stomach	stomach
3	chr10:110662200-110665000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:110662400-110664600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr10:110663000-110664200	Weak transcription	Adipose Nuclei	Adipose
6	chr10:110663000-110664600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:110663200-110664200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:110663800-110664600	Enhancers	Fetal Kidney	kidney
9	chr10:110664000-110664400	Enhancers	Fetal Intestine Small	intestine
10	chr10:110664000-110664800	Enhancers	Fetal Muscle Leg	muscle
11	chr10:110664000-110664800	Enhancers	Ovary	ovary
12	chr10:110664000-110665600	Enhancers	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links