Variant report

Variant	rs17779136
Chromosome Location	chr10:110727710-110727711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10509879	0.89[AMR][1000 genomes]
rs11591627	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11592183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11594594	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11595986	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11596046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11596191	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11596847	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11597293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11597372	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17698729	0.86[AMR][1000 genomes]
rs17698968	0.86[CEU][hapmap];0.89[AMR][1000 genomes]
rs17700240	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17700780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17701356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17771704	0.89[AMR][1000 genomes]
rs17778423	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17779611	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34633864	0.86[AMR][1000 genomes]
rs35274948	0.89[AMR][1000 genomes]
rs4525159	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs66861789	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs68039803	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72828090	0.86[AMR][1000 genomes]
rs72828101	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72828102	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72829903	0.83[EUR][1000 genomes]
rs72829904	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72829905	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72829906	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72829907	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72829908	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72829909	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72829910	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72829912	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72829914	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72829915	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72829916	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72829917	0.83[EUR][1000 genomes]
rs72829951	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72829991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050244	chr10:110279647-110779693	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv917125	chr10:110425573-111119776	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv492162	chr10:110440656-111089721	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1067661	chr10:110440715-111089466	Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv529130	chr10:110440715-111089466	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	esv3429369	chr10:110454775-110753351	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	esv2750851	chr10:110503788-110905211	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv895993	chr10:110639267-110814528	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv895994	chr10:110702426-110982703	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv895995	chr10:110702426-111348202	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	esv2756294	chr10:110718705-110778737	Enhancers Weak transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17779136	MXI1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:110726400-110727800	Weak transcription	Fetal Brain Female	brain

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