Variant report

Variant	rs72829903
Chromosome Location	chr10:110664606-110664607
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10509879	0.86[EUR][1000 genomes]
rs11591627	0.97[EUR][1000 genomes]
rs11592183	0.83[EUR][1000 genomes]
rs11594594	0.97[EUR][1000 genomes]
rs11596191	0.97[EUR][1000 genomes]
rs11596847	0.83[EUR][1000 genomes]
rs17698048	0.84[EUR][1000 genomes]
rs17698729	0.84[EUR][1000 genomes]
rs17698968	0.86[EUR][1000 genomes]
rs17700240	0.94[EUR][1000 genomes]
rs17700780	0.83[EUR][1000 genomes]
rs17770955	0.80[EUR][1000 genomes]
rs17771704	0.86[EUR][1000 genomes]
rs17778423	0.94[EUR][1000 genomes]
rs17779136	0.83[EUR][1000 genomes]
rs34633864	0.89[EUR][1000 genomes]
rs35274948	0.82[EUR][1000 genomes]
rs4258310	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59080228	0.83[EUR][1000 genomes]
rs60930604	0.81[EUR][1000 genomes]
rs66596379	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66861789	0.83[EUR][1000 genomes]
rs67026641	0.80[EUR][1000 genomes]
rs67421416	0.80[EUR][1000 genomes]
rs67837870	0.81[EUR][1000 genomes]
rs68039803	0.83[EUR][1000 genomes]
rs7100485	0.81[EUR][1000 genomes]
rs72828090	0.87[EUR][1000 genomes]
rs72828101	0.94[EUR][1000 genomes]
rs72828102	0.97[EUR][1000 genomes]
rs72829904	0.97[EUR][1000 genomes]
rs72829905	0.97[EUR][1000 genomes]
rs72829906	0.97[EUR][1000 genomes]
rs72829907	0.95[EUR][1000 genomes]
rs72829908	0.97[EUR][1000 genomes]
rs72829909	0.97[EUR][1000 genomes]
rs72829910	0.97[EUR][1000 genomes]
rs72829912	0.91[EUR][1000 genomes]
rs72829914	0.97[EUR][1000 genomes]
rs72829915	0.97[EUR][1000 genomes]
rs72829916	0.97[EUR][1000 genomes]
rs72829917	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72829951	0.83[EUR][1000 genomes]
rs73344746	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050244	chr10:110279647-110779693	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv917125	chr10:110425573-111119776	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv492162	chr10:110440656-111089721	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1067661	chr10:110440715-111089466	Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv529130	chr10:110440715-111089466	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	esv3429369	chr10:110454775-110753351	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	esv2750851	chr10:110503788-110905211	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv895993	chr10:110639267-110814528	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:110661200-110665800	Enhancers	Fetal Lung	lung
2	chr10:110661600-110666200	Enhancers	Fetal Stomach	stomach
3	chr10:110662200-110665000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:110664000-110664800	Enhancers	Fetal Muscle Leg	muscle
5	chr10:110664000-110664800	Enhancers	Ovary	ovary
6	chr10:110664000-110665600	Enhancers	Fetal Brain Female	brain
7	chr10:110664200-110664800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:110664200-110664800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr10:110664200-110664800	Enhancers	Liver	Liver
10	chr10:110664200-110665000	Enhancers	Fetal Brain Male	brain
11	chr10:110664600-110665000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:110664600-110665000	Weak transcription	Fetal Kidney	kidney
13	chr10:110664600-110666400	Weak transcription	Adipose Nuclei	Adipose

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