Variant report

Variant	rs6806749
Chromosome Location	chr3:60661294-60661295
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12488640	0.83[ASN][1000 genomes]
rs13085845	0.83[ASN][1000 genomes]
rs13086029	0.83[ASN][1000 genomes]
rs1623091	0.83[ASN][1000 genomes]
rs1716714	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1716718	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1716733	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1716739	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1735440	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1735445	0.83[ASN][1000 genomes]
rs1735446	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1735452	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1735453	0.85[AMR][1000 genomes]
rs1735454	0.85[EUR][1000 genomes]
rs1735457	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1735458	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36040131	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62249156	0.81[ASN][1000 genomes]
rs986687	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60658600-60664400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:60660400-60661400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:60661200-60661800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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