Variant report

Variant	rs1735458
Chromosome Location	chr3:60683840-60683841
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12488640	0.92[ASN][1000 genomes]
rs13085845	0.92[ASN][1000 genomes]
rs13086029	0.92[ASN][1000 genomes]
rs13096315	0.95[ASN][1000 genomes]
rs1620446	0.86[ASN][1000 genomes]
rs1623091	0.92[ASN][1000 genomes]
rs1716703	0.86[ASN][1000 genomes]
rs1716709	0.86[ASN][1000 genomes]
rs1716710	0.86[ASN][1000 genomes]
rs1716713	0.86[ASN][1000 genomes]
rs1716714	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1716717	0.86[ASN][1000 genomes]
rs1716718	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1716721	0.88[ASN][1000 genomes]
rs1716722	0.88[ASN][1000 genomes]
rs1716723	0.88[ASN][1000 genomes]
rs1716730	0.88[ASN][1000 genomes]
rs1716732	0.90[ASN][1000 genomes]
rs1716733	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1716739	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1735440	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1735443	0.86[ASN][1000 genomes]
rs1735445	0.92[ASN][1000 genomes]
rs1735446	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1735448	0.86[ASN][1000 genomes]
rs1735452	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1735453	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1735454	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1735457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1735463	0.93[ASN][1000 genomes]
rs1735468	0.80[ASN][1000 genomes]
rs17627239	0.89[ASN][1000 genomes]
rs2142299	0.88[ASN][1000 genomes]
rs2682952	0.84[ASN][1000 genomes]
rs2855998	0.83[ASN][1000 genomes]
rs62249153	0.84[ASN][1000 genomes]
rs62249156	0.90[ASN][1000 genomes]
rs62249273	0.89[ASN][1000 genomes]
rs62251488	0.80[ASN][1000 genomes]
rs62251490	0.89[ASN][1000 genomes]
rs6801067	0.89[ASN][1000 genomes]
rs6806749	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs986687	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60671400-60685600	Weak transcription	Pancreas	Pancrea
2	chr3:60679800-60684000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:60681000-60685600	Weak transcription	Psoas Muscle	Psoas
4	chr3:60681400-60685600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:60682400-60685600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:60683200-60685200	Weak transcription	Liver	Liver
7	chr3:60683400-60684400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:60683400-60684400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:60683400-60684800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr3:60683600-60684200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:60683600-60684400	Enhancers	Fetal Heart	heart
12	chr3:60683600-60684600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr3:60683600-60684600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr3:60683600-60684600	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr3:60683600-60684800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr3:60683600-60685200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr3:60683800-60684400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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