Variant report

Variant	rs1735468
Chromosome Location	chr3:60703616-60703617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11130780	0.96[YRI][hapmap]
rs12488640	0.82[ASN][1000 genomes]
rs13085845	0.82[ASN][1000 genomes]
rs13086029	0.82[ASN][1000 genomes]
rs1620446	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs1623091	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs1623349	0.86[ASN][1000 genomes]
rs1716709	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs1716714	0.90[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs1716717	0.90[CHB][hapmap]
rs1716718	0.90[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs1716721	0.90[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.88[MKK][hapmap];0.91[ASN][1000 genomes]
rs1716722	0.90[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.88[MKK][hapmap];0.91[ASN][1000 genomes]
rs1716723	0.81[CHB][hapmap];0.82[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1716730	0.90[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.89[MKK][hapmap];0.91[ASN][1000 genomes]
rs1716733	0.91[ASN][1000 genomes]
rs1716734	0.90[CHB][hapmap]
rs1716736	0.90[CHB][hapmap]
rs1716739	0.90[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs1716753	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1735440	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs1735443	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs1735444	0.82[CHB][hapmap]
rs1735445	0.82[ASN][1000 genomes]
rs1735446	0.82[ASN][1000 genomes]
rs1735448	0.82[CHB][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.87[MEX][hapmap]
rs1735452	0.91[ASN][1000 genomes]
rs1735453	0.90[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs1735454	0.90[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs1735457	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs1735458	0.80[ASN][1000 genomes]
rs1735463	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1735467	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.85[YRI][hapmap]
rs1735475	0.90[CHB][hapmap]
rs17627239	0.82[ASN][1000 genomes]
rs17627738	0.90[CHB][hapmap];0.84[CHD][hapmap]
rs2142299	0.90[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs2855998	0.85[JPT][hapmap]
rs62249156	0.80[ASN][1000 genomes]
rs62249273	0.82[ASN][1000 genomes]
rs6801067	0.82[ASN][1000 genomes]
rs986687	0.90[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1735468	DNASE1L3	cis	parietal	SCAN
rs1735468	HPCAL4	trans	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60703600-60705200	Enhancers	Brain Germinal Matrix	brain

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