Variant report

Variant	rs1716736
Chromosome Location	chr3:60670456-60670457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:60669436..60671802-chr3:60824320..60825859,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs12488640	0.98[ASN][1000 genomes]
rs12632090	0.83[CHB][hapmap]
rs13085845	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13086029	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13096315	0.89[ASN][1000 genomes]
rs1620446	1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs1623091	1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs1716703	0.92[ASN][1000 genomes]
rs1716709	1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs1716710	0.92[ASN][1000 genomes]
rs1716713	0.92[ASN][1000 genomes]
rs1716714	1.00[CHB][hapmap];0.85[JPT][hapmap];0.98[ASN][1000 genomes]
rs1716717	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs1716718	1.00[CHB][hapmap];0.85[JPT][hapmap];0.98[ASN][1000 genomes]
rs1716721	0.81[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs1716722	0.81[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs1716723	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs1716730	0.81[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs1716732	0.90[ASN][1000 genomes]
rs1716733	0.88[ASN][1000 genomes]
rs1716734	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1716739	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1716753	0.81[CHB][hapmap]
rs1735440	1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs1735443	0.91[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs1735444	0.91[CHB][hapmap]
rs1735445	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1735446	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1735448	0.91[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs1735452	0.88[ASN][1000 genomes]
rs1735453	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs1735454	0.81[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs1735457	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1735458	0.93[ASN][1000 genomes]
rs1735463	0.90[ASN][1000 genomes]
rs1735467	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1735468	0.90[CHB][hapmap]
rs1735475	0.81[CHB][hapmap]
rs17627239	0.85[ASN][1000 genomes]
rs17627738	0.81[CHB][hapmap]
rs2142299	0.81[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs2682952	0.90[ASN][1000 genomes]
rs2855998	0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs2856056	0.81[CHB][hapmap]
rs62249153	0.90[ASN][1000 genomes]
rs62249156	0.97[ASN][1000 genomes]
rs62249273	0.85[ASN][1000 genomes]
rs62251488	0.87[ASN][1000 genomes]
rs62251490	0.95[ASN][1000 genomes]
rs6801067	0.85[ASN][1000 genomes]
rs6806749	0.81[ASN][1000 genomes]
rs986687	1.00[CHB][hapmap];0.85[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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