Variant report

Variant	rs17627239
Chromosome Location	chr3:60706631-60706632
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12488640	0.87[ASN][1000 genomes]
rs13085845	0.87[ASN][1000 genomes]
rs13086029	0.87[ASN][1000 genomes]
rs13096315	0.84[ASN][1000 genomes]
rs1620446	0.81[ASN][1000 genomes]
rs1623091	0.87[ASN][1000 genomes]
rs1716703	0.81[ASN][1000 genomes]
rs1716709	0.81[ASN][1000 genomes]
rs1716710	0.81[ASN][1000 genomes]
rs1716713	0.81[ASN][1000 genomes]
rs1716714	0.87[ASN][1000 genomes]
rs1716717	0.81[ASN][1000 genomes]
rs1716718	0.87[ASN][1000 genomes]
rs1716732	0.83[ASN][1000 genomes]
rs1716739	0.87[ASN][1000 genomes]
rs1716753	0.85[ASN][1000 genomes]
rs1735440	0.84[ASN][1000 genomes]
rs1735443	0.81[ASN][1000 genomes]
rs1735445	0.87[ASN][1000 genomes]
rs1735446	0.87[ASN][1000 genomes]
rs1735448	0.81[ASN][1000 genomes]
rs1735457	0.89[ASN][1000 genomes]
rs1735458	0.89[ASN][1000 genomes]
rs1735463	0.95[ASN][1000 genomes]
rs1735468	0.82[ASN][1000 genomes]
rs2682952	0.82[ASN][1000 genomes]
rs2855998	0.81[ASN][1000 genomes]
rs62249153	0.82[ASN][1000 genomes]
rs62249156	0.85[ASN][1000 genomes]
rs62249273	1.00[ASN][1000 genomes]
rs62251490	0.84[ASN][1000 genomes]
rs6801067	1.00[ASN][1000 genomes]
rs986687	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60705600-60707000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:60705600-60708200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:60705800-60707000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:60706000-60708000	Enhancers	Osteobl	bone
5	chr3:60706000-60708200	Enhancers	NHDF-Ad	bronchial
6	chr3:60706000-60710000	Enhancers	Brain Germinal Matrix	brain
7	chr3:60706200-60708200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr3:60706400-60707400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:60706600-60707400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:60706600-60707600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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