Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12492639	0.86[AFR][1000 genomes]
rs1620446	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs1623091	0.81[CHB][hapmap]
rs1623349	0.93[ASN][1000 genomes]
rs1716709	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs1716714	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs1716717	0.81[CHB][hapmap]
rs1716718	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs1716721	0.81[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs1716722	0.81[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs1716723	0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs1716730	0.81[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs1716733	0.87[ASN][1000 genomes]
rs1716734	0.81[CHB][hapmap]
rs1716736	0.81[CHB][hapmap]
rs1716739	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs1735440	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs1735443	0.85[JPT][hapmap]
rs1735448	0.85[JPT][hapmap]
rs1735452	0.87[ASN][1000 genomes]
rs1735453	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs1735454	0.81[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs1735463	0.83[ASN][1000 genomes]
rs1735467	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs1735468	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1735475	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs17627239	0.85[ASN][1000 genomes]
rs2142299	0.81[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs2855998	0.85[JPT][hapmap]
rs62249273	0.85[ASN][1000 genomes]
rs6801067	0.85[ASN][1000 genomes]
rs7643144	0.86[LWK][hapmap];0.90[MKK][hapmap];0.80[AFR][1000 genomes]
rs986687	0.81[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60708200-60713600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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