Variant report

Variant	rs1716723
Chromosome Location	chr3:60686952-60686953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11130780	0.93[YRI][hapmap]
rs12488640	0.83[ASN][1000 genomes]
rs13085845	0.83[ASN][1000 genomes]
rs13086029	0.83[ASN][1000 genomes]
rs13096315	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1623091	0.83[ASN][1000 genomes]
rs1623349	0.81[ASN][1000 genomes]
rs1716714	0.83[ASN][1000 genomes]
rs1716717	0.81[AMR][1000 genomes]
rs1716718	0.83[ASN][1000 genomes]
rs1716721	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1716722	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1716726	0.89[AFR][1000 genomes]
rs1716730	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1716732	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1716733	0.96[ASN][1000 genomes]
rs1716734	0.82[JPT][hapmap]
rs1716736	0.82[JPT][hapmap]
rs1716739	0.83[ASN][1000 genomes]
rs1716753	0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs1735440	0.81[ASN][1000 genomes]
rs1735443	0.83[AMR][1000 genomes]
rs1735445	0.83[ASN][1000 genomes]
rs1735446	0.83[ASN][1000 genomes]
rs1735452	0.96[ASN][1000 genomes]
rs1735453	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1735454	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1735457	0.81[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs1735458	0.88[ASN][1000 genomes]
rs1735463	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1735467	0.92[YRI][hapmap]
rs1735468	0.81[CHB][hapmap];0.82[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2142299	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs62249156	0.82[ASN][1000 genomes]
rs62251490	0.81[ASN][1000 genomes]
rs6772346	0.84[YRI][hapmap]
rs7618351	0.84[YRI][hapmap]
rs9839778	0.85[YRI][hapmap]
rs9861551	0.85[YRI][hapmap]
rs9861707	0.84[YRI][hapmap]
rs986687	0.83[ASN][1000 genomes]
rs9878248	0.84[YRI][hapmap]
rs9881065	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60684400-60690000	Weak transcription	Right Ventricle	heart
2	chr3:60685800-60687000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:60685800-60688600	Weak transcription	Pancreas	Pancrea
4	chr3:60685800-60688800	Weak transcription	Psoas Muscle	Psoas
5	chr3:60685800-60690400	Weak transcription	H1 Cell Line	embryonic stem cell

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