Variant report

Variant	rs1735446
Chromosome Location	chr3:60667028-60667029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12488640	1.00[ASN][1000 genomes]
rs13085845	1.00[ASN][1000 genomes]
rs13086029	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13096315	0.87[ASN][1000 genomes]
rs1620446	0.94[ASN][1000 genomes]
rs1623091	1.00[ASN][1000 genomes]
rs1716703	0.94[ASN][1000 genomes]
rs1716709	0.94[ASN][1000 genomes]
rs1716710	0.94[ASN][1000 genomes]
rs1716713	0.94[ASN][1000 genomes]
rs1716714	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1716717	0.94[ASN][1000 genomes]
rs1716718	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1716721	0.83[ASN][1000 genomes]
rs1716722	0.83[ASN][1000 genomes]
rs1716723	0.83[ASN][1000 genomes]
rs1716730	0.83[ASN][1000 genomes]
rs1716732	0.89[ASN][1000 genomes]
rs1716733	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1716739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1735440	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1735443	0.94[ASN][1000 genomes]
rs1735445	1.00[ASN][1000 genomes]
rs1735448	0.94[ASN][1000 genomes]
rs1735452	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1735453	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1735454	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1735457	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1735458	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1735463	0.92[ASN][1000 genomes]
rs1735468	0.82[ASN][1000 genomes]
rs17627239	0.87[ASN][1000 genomes]
rs2142299	0.83[ASN][1000 genomes]
rs2682952	0.92[ASN][1000 genomes]
rs2855998	0.90[ASN][1000 genomes]
rs62249153	0.92[ASN][1000 genomes]
rs62249156	0.98[ASN][1000 genomes]
rs62249273	0.87[ASN][1000 genomes]
rs62251488	0.88[ASN][1000 genomes]
rs62251490	0.97[ASN][1000 genomes]
rs6801067	0.87[ASN][1000 genomes]
rs6806749	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs986687	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60666800-60668200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr3:60667000-60667600	Enhancers	Primary T cells from cord blood	blood
3	chr3:60667000-60668000	Enhancers	Thymus	Thymus
4	chr3:60667000-60668200	Enhancers	Fetal Thymus	thymus
5	chr3:60667000-60668200	Enhancers	Dnd41	blood

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