Variant report

Variant	rs2855998
Chromosome Location	chr3:60640157-60640158
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12488640	0.90[ASN][1000 genomes]
rs12632090	0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13085845	0.90[ASN][1000 genomes]
rs13086029	0.90[ASN][1000 genomes]
rs1620446	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1623091	0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs1716703	0.84[ASN][1000 genomes]
rs1716709	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1716710	0.84[ASN][1000 genomes]
rs1716713	0.84[ASN][1000 genomes]
rs1716714	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1716717	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs1716718	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1716734	0.85[JPT][hapmap]
rs1716736	0.85[JPT][hapmap]
rs1716739	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1716753	0.85[JPT][hapmap]
rs1735440	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1735443	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1735445	0.90[ASN][1000 genomes]
rs1735446	0.90[ASN][1000 genomes]
rs1735448	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1735457	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs1735458	0.83[ASN][1000 genomes]
rs1735463	0.86[ASN][1000 genomes]
rs1735467	1.00[JPT][hapmap]
rs1735468	0.85[JPT][hapmap]
rs17627239	0.81[ASN][1000 genomes]
rs2682930	0.86[JPT][hapmap];0.90[EUR][1000 genomes]
rs2682931	0.86[JPT][hapmap];0.90[EUR][1000 genomes]
rs2682945	0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs2682952	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2856058	0.86[JPT][hapmap]
rs2856067	0.90[EUR][1000 genomes]
rs2856068	0.86[JPT][hapmap];0.90[EUR][1000 genomes]
rs62249153	0.98[ASN][1000 genomes]
rs62249156	0.89[ASN][1000 genomes]
rs62249273	0.81[ASN][1000 genomes]
rs62251490	0.87[ASN][1000 genomes]
rs6801067	0.81[ASN][1000 genomes]
rs986687	1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60638000-60644400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr3:60640000-60645800	Weak transcription	H9 Cell Line	embryonic stem cell

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