Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12632090	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1620446	0.86[JPT][hapmap]
rs1716709	0.86[JPT][hapmap]
rs1716714	0.86[JPT][hapmap]
rs1716718	0.86[JPT][hapmap]
rs1716739	0.86[JPT][hapmap]
rs1735440	0.86[JPT][hapmap]
rs1735443	0.86[JPT][hapmap]
rs1735448	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs1735467	0.85[JPT][hapmap]
rs2682930	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2682931	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2682945	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2682952	0.90[EUR][1000 genomes]
rs2855998	0.86[JPT][hapmap];0.90[EUR][1000 genomes]
rs2856056	0.90[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs2856058	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2856060	0.99[ASN][1000 genomes]
rs2856067	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs986687	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60629000-60630800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr3:60630400-60631000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:60630400-60631200	Enhancers	Aorta	Aorta
4	chr3:60630400-60631200	Enhancers	Right Atrium	heart
5	chr3:60630600-60631000	Weak transcription	Adipose Nuclei	Adipose

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