Variant report

Variant	rs2856058
Chromosome Location	chr3:60625598-60625599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12632090	0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1618561	0.87[EUR][1000 genomes]
rs1620446	0.86[JPT][hapmap]
rs1623091	0.87[CEU][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs1716709	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs1716714	0.86[JPT][hapmap]
rs1716718	0.86[JPT][hapmap]
rs1716739	0.86[JPT][hapmap]
rs1735440	0.86[JPT][hapmap]
rs1735443	0.86[JPT][hapmap]
rs1735448	0.82[CHB][hapmap];0.86[JPT][hapmap];0.83[TSI][hapmap]
rs1735451	0.86[EUR][1000 genomes]
rs1735467	0.85[JPT][hapmap]
rs2682930	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2682931	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];1.00[ASN][1000 genomes]
rs2682945	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2855998	0.86[JPT][hapmap]
rs2856056	0.81[ASW][hapmap];0.87[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2856057	0.82[ASW][hapmap];0.87[CEU][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];0.89[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes]
rs2856060	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2856067	1.00[ASN][1000 genomes]
rs2856068	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs62249152	0.81[EUR][1000 genomes]
rs986687	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60622800-60625800	Weak transcription	Dnd41	blood
2	chr3:60622800-60627600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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