Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1618561	0.91[ASN][1000 genomes]
rs1620446	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs1623091	0.87[CEU][hapmap];0.83[CHB][hapmap]
rs1716709	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs1716714	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs1716717	0.83[CHB][hapmap]
rs1716718	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs1716734	0.83[CHB][hapmap]
rs1716736	0.83[CHB][hapmap]
rs1716739	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs1735440	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs1735443	0.86[JPT][hapmap]
rs1735448	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs1735451	0.91[ASN][1000 genomes]
rs1735467	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs2682930	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2682931	0.94[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2682945	0.94[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2682952	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2855998	0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2856056	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs2856058	0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2856060	0.86[ASN][1000 genomes]
rs2856067	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2856068	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs986687	0.83[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60630800-60639400	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr3:60637400-60638000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr3:60637400-60638000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:60637400-60638200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr3:60637600-60638000	Enhancers	H9 Cell Line	embryonic stem cell
6	chr3:60637600-60638000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr3:60637800-60638200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:60637800-60639600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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