Variant report

Variant	rs2856056
Chromosome Location	chr3:60625101-60625102
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12632090	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs1620446	0.81[CHB][hapmap]
rs1623091	0.81[CHB][hapmap];0.82[TSI][hapmap]
rs1716703	0.82[EUR][1000 genomes]
rs1716705	0.83[EUR][1000 genomes]
rs1716709	0.81[CHB][hapmap]
rs1716714	0.81[CHB][hapmap]
rs1716717	0.81[CHB][hapmap]
rs1716718	0.81[CHB][hapmap]
rs1716734	0.81[CHB][hapmap]
rs1716736	0.81[CHB][hapmap]
rs1716739	0.81[CHB][hapmap]
rs1735440	0.81[CHB][hapmap]
rs1735448	0.87[CEU][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs1735467	0.81[CHB][hapmap]
rs1735473	0.83[EUR][1000 genomes]
rs2682930	0.90[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs2682931	0.81[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs2682945	0.81[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs2856055	0.88[CEU][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2856057	0.82[ASW][hapmap];1.00[CEU][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2856058	0.81[ASW][hapmap];0.87[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2856060	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2856067	0.90[ASN][1000 genomes]
rs2856068	0.90[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs986687	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60622800-60625800	Weak transcription	Dnd41	blood
2	chr3:60622800-60627600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:60625000-60625200	Weak transcription	H1 Cell Line	embryonic stem cell

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