Variant report

Variant	rs6806772
Chromosome Location	chr3:17909910-17909911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11916577	1.00[AMR][1000 genomes]
rs59014243	1.00[AMR][1000 genomes]
rs59344218	1.00[AMR][1000 genomes]
rs6772103	1.00[AMR][1000 genomes]
rs6776171	1.00[AMR][1000 genomes]
rs6780065	1.00[AMR][1000 genomes]
rs6780156	1.00[AMR][1000 genomes]
rs6795003	1.00[AMR][1000 genomes]
rs6797766	1.00[AMR][1000 genomes]
rs6803185	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6803292	1.00[AMR][1000 genomes]
rs73160124	1.00[AMR][1000 genomes]
rs73160131	1.00[AMR][1000 genomes]
rs73160137	1.00[AMR][1000 genomes]
rs73160141	1.00[AMR][1000 genomes]
rs73160149	1.00[AMR][1000 genomes]
rs73160152	1.00[AMR][1000 genomes]
rs7620582	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17903400-17913600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:17904200-17936200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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