Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11923621	0.87[AFR][1000 genomes]
rs59014243	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59344218	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59965992	0.87[AFR][1000 genomes]
rs60489176	0.87[AFR][1000 genomes]
rs6768225	0.82[AFR][1000 genomes]
rs6772103	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6776171	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6780065	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6780156	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6795003	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6797766	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6803185	1.00[AMR][1000 genomes]
rs6803292	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6806772	1.00[AMR][1000 genomes]
rs73160124	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73160131	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73160132	0.87[AFR][1000 genomes]
rs73160137	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73160141	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73160149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73160152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73160179	0.87[AFR][1000 genomes]
rs7620582	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17904200-17936200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:17932000-17933400	Enhancers	Fetal Heart	heart
3	chr3:17932200-17933600	Enhancers	Gastric	stomach
4	chr3:17932600-17933400	Enhancers	K562	blood
5	chr3:17932800-17933600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:17932800-17934200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:17933000-17933400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:17933000-17933600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:17933200-17933600	Enhancers	Osteobl	bone

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