Variant report

Variant	rs60489176
Chromosome Location	chr3:17923457-17923458
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11916577	0.87[AFR][1000 genomes]
rs11918544	0.80[AFR][1000 genomes]
rs11923621	1.00[AFR][1000 genomes]
rs59014243	0.90[AFR][1000 genomes]
rs59344218	0.83[AFR][1000 genomes]
rs59925373	0.80[AFR][1000 genomes]
rs59965992	1.00[AFR][1000 genomes]
rs6772103	0.83[AFR][1000 genomes]
rs6776171	0.83[AFR][1000 genomes]
rs6780065	0.83[AFR][1000 genomes]
rs6780156	0.83[AFR][1000 genomes]
rs6795003	0.83[AFR][1000 genomes]
rs6797766	0.83[AFR][1000 genomes]
rs6803292	0.83[AFR][1000 genomes]
rs73160120	0.80[AFR][1000 genomes]
rs73160124	0.83[AFR][1000 genomes]
rs73160131	0.83[AFR][1000 genomes]
rs73160132	1.00[AFR][1000 genomes]
rs73160137	0.83[AFR][1000 genomes]
rs73160141	0.83[AFR][1000 genomes]
rs73160145	0.80[AFR][1000 genomes]
rs73160149	0.87[AFR][1000 genomes]
rs73160151	0.80[AFR][1000 genomes]
rs73160152	0.87[AFR][1000 genomes]
rs73160153	0.80[AFR][1000 genomes]
rs73160179	1.00[AFR][1000 genomes]
rs73160182	0.80[AFR][1000 genomes]
rs73160186	0.80[AFR][1000 genomes]
rs73160189	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17904200-17936200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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