Variant report

Variant	rs73160186
Chromosome Location	chr3:17954856-17954857
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11915290	0.90[AFR][1000 genomes]
rs11918544	1.00[AFR][1000 genomes]
rs11918876	0.94[AFR][1000 genomes]
rs11923621	0.80[AFR][1000 genomes]
rs11925807	0.90[AFR][1000 genomes]
rs57535465	0.90[AFR][1000 genomes]
rs59347365	0.83[AFR][1000 genomes]
rs59925373	1.00[AFR][1000 genomes]
rs59965992	0.80[AFR][1000 genomes]
rs60489176	0.80[AFR][1000 genomes]
rs61647180	0.90[AFR][1000 genomes]
rs73160109	0.86[AFR][1000 genomes]
rs73160111	0.97[AFR][1000 genomes]
rs73160120	1.00[AFR][1000 genomes]
rs73160121	0.94[AFR][1000 genomes]
rs73160132	0.80[AFR][1000 genomes]
rs73160145	1.00[AFR][1000 genomes]
rs73160151	1.00[AFR][1000 genomes]
rs73160153	1.00[AFR][1000 genomes]
rs73160178	0.90[AFR][1000 genomes]
rs73160179	0.80[AFR][1000 genomes]
rs73160182	1.00[AFR][1000 genomes]
rs73160188	0.91[AFR][1000 genomes]
rs73160189	1.00[AFR][1000 genomes]
rs73160201	0.97[AFR][1000 genomes]
rs73171708	0.90[AFR][1000 genomes]
rs73171709	0.90[AFR][1000 genomes]
rs73171728	0.90[AFR][1000 genomes]
rs73171737	0.90[AFR][1000 genomes]
rs73171739	0.90[AFR][1000 genomes]
rs73171744	0.90[AFR][1000 genomes]
rs73171745	0.90[AFR][1000 genomes]
rs73171750	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17950600-17959600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:17952200-17956400	Enhancers	Fetal Thymus	thymus
3	chr3:17952800-17955400	Enhancers	Primary B cells from cord blood	blood
4	chr3:17953800-17955000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:17953800-17955800	Enhancers	Thymus	Thymus
6	chr3:17954200-17955800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr3:17954200-17956200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr3:17954400-17955200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
9	chr3:17954400-17955400	Enhancers	Primary hematopoietic stem cells	blood
10	chr3:17954400-17956200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:17954400-17957800	Enhancers	Dnd41	blood
12	chr3:17954600-17956200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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