Variant report

Variant	rs73160120
Chromosome Location	chr3:17905903-17905904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11915290	0.90[AFR][1000 genomes]
rs11918544	1.00[AFR][1000 genomes]
rs11918876	0.94[AFR][1000 genomes]
rs11923621	0.80[AFR][1000 genomes]
rs11925807	0.90[AFR][1000 genomes]
rs57535465	0.90[AFR][1000 genomes]
rs59347365	0.83[AFR][1000 genomes]
rs59925373	1.00[AFR][1000 genomes]
rs59965992	0.80[AFR][1000 genomes]
rs60489176	0.80[AFR][1000 genomes]
rs61647180	0.90[AFR][1000 genomes]
rs73160109	0.86[AFR][1000 genomes]
rs73160111	0.97[AFR][1000 genomes]
rs73160121	0.94[AFR][1000 genomes]
rs73160132	0.80[AFR][1000 genomes]
rs73160145	1.00[AFR][1000 genomes]
rs73160151	1.00[AFR][1000 genomes]
rs73160153	1.00[AFR][1000 genomes]
rs73160178	0.90[AFR][1000 genomes]
rs73160179	0.80[AFR][1000 genomes]
rs73160182	1.00[AFR][1000 genomes]
rs73160186	1.00[AFR][1000 genomes]
rs73160188	0.91[AFR][1000 genomes]
rs73160189	1.00[AFR][1000 genomes]
rs73160201	0.97[AFR][1000 genomes]
rs73171708	0.90[AFR][1000 genomes]
rs73171709	0.90[AFR][1000 genomes]
rs73171728	0.90[AFR][1000 genomes]
rs73171737	0.90[AFR][1000 genomes]
rs73171739	0.90[AFR][1000 genomes]
rs73171744	0.90[AFR][1000 genomes]
rs73171745	0.90[AFR][1000 genomes]
rs73171750	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17903400-17913600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:17904200-17908000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:17904200-17908600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:17904200-17936200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:17904400-17906200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:17904400-17908600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:17904800-17909400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:17905600-17906400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:17905600-17909000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links