Variant report

Variant	rs73160178
Chromosome Location	chr3:17945599-17945600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11918544	0.90[AFR][1000 genomes]
rs11918876	0.84[AFR][1000 genomes]
rs11922565	0.89[AFR][1000 genomes]
rs57982713	0.89[AFR][1000 genomes]
rs59925373	0.90[AFR][1000 genomes]
rs73160109	0.96[AFR][1000 genomes]
rs73160111	0.86[AFR][1000 genomes]
rs73160120	0.90[AFR][1000 genomes]
rs73160121	0.84[AFR][1000 genomes]
rs73160145	0.90[AFR][1000 genomes]
rs73160151	0.90[AFR][1000 genomes]
rs73160153	0.90[AFR][1000 genomes]
rs73160182	0.90[AFR][1000 genomes]
rs73160186	0.90[AFR][1000 genomes]
rs73160188	0.81[AFR][1000 genomes]
rs73160189	0.90[AFR][1000 genomes]
rs73160201	0.87[AFR][1000 genomes]
rs73169999	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17936800-17950200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:17942800-17953800	Enhancers	Dnd41	blood
3	chr3:17943000-17945600	Enhancers	Primary hematopoietic stem cells	blood
4	chr3:17943200-17947400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr3:17943400-17947000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:17943600-17945600	Weak transcription	Fetal Heart	heart
7	chr3:17943800-17947600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr3:17944400-17946000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:17944600-17946000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr3:17944800-17953600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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