Variant report
| Variant | rs73160111 |
|---|---|
| Chromosome Location | chr3:17892935-17892936 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000131374 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11915290 | 0.86[AFR][1000 genomes] |
| rs11918544 | 0.97[AFR][1000 genomes] |
| rs11918876 | 0.90[AFR][1000 genomes] |
| rs11925807 | 0.86[AFR][1000 genomes] |
| rs57535465 | 0.86[AFR][1000 genomes] |
| rs59925373 | 0.97[AFR][1000 genomes] |
| rs61647180 | 0.86[AFR][1000 genomes] |
| rs73160109 | 0.89[AFR][1000 genomes] |
| rs73160120 | 0.97[AFR][1000 genomes] |
| rs73160121 | 0.90[AFR][1000 genomes] |
| rs73160145 | 0.97[AFR][1000 genomes] |
| rs73160151 | 0.97[AFR][1000 genomes] |
| rs73160153 | 0.97[AFR][1000 genomes] |
| rs73160178 | 0.86[AFR][1000 genomes] |
| rs73160182 | 0.97[AFR][1000 genomes] |
| rs73160186 | 0.97[AFR][1000 genomes] |
| rs73160188 | 0.87[AFR][1000 genomes] |
| rs73160189 | 0.97[AFR][1000 genomes] |
| rs73160201 | 0.93[AFR][1000 genomes] |
| rs73171708 | 0.86[AFR][1000 genomes] |
| rs73171709 | 0.86[AFR][1000 genomes] |
| rs73171728 | 0.86[AFR][1000 genomes] |
| rs73171737 | 0.86[AFR][1000 genomes] |
| rs73171739 | 0.86[AFR][1000 genomes] |
| rs73171744 | 0.86[AFR][1000 genomes] |
| rs73171745 | 0.86[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999594 | chr3:17690416-17982318 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:17891800-17893200 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 2 | chr3:17892800-17893000 | Enhancers | NHDF-Ad | bronchial |
