Variant report

Variant	rs73171709
Chromosome Location	chr3:18022975-18022976
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11915290	1.00[AFR][1000 genomes]
rs11918544	0.90[AFR][1000 genomes]
rs11918876	0.84[AFR][1000 genomes]
rs11922565	0.89[AFR][1000 genomes]
rs11925807	1.00[AFR][1000 genomes]
rs57535465	1.00[AFR][1000 genomes]
rs57982713	0.89[AFR][1000 genomes]
rs59347365	0.93[AFR][1000 genomes]
rs59925373	0.90[AFR][1000 genomes]
rs61647180	1.00[AFR][1000 genomes]
rs73160111	0.86[AFR][1000 genomes]
rs73160120	0.90[AFR][1000 genomes]
rs73160121	0.84[AFR][1000 genomes]
rs73160145	0.90[AFR][1000 genomes]
rs73160151	0.90[AFR][1000 genomes]
rs73160153	0.90[AFR][1000 genomes]
rs73160182	0.90[AFR][1000 genomes]
rs73160186	0.90[AFR][1000 genomes]
rs73160188	0.81[AFR][1000 genomes]
rs73160189	0.90[AFR][1000 genomes]
rs73160201	0.87[AFR][1000 genomes]
rs73169999	0.83[AFR][1000 genomes]
rs73171708	1.00[AFR][1000 genomes]
rs73171728	1.00[AFR][1000 genomes]
rs73171737	1.00[AFR][1000 genomes]
rs73171739	1.00[AFR][1000 genomes]
rs73171744	1.00[AFR][1000 genomes]
rs73171745	1.00[AFR][1000 genomes]
rs73171750	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1807571	chr3:18017246-18057347	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:18019200-18031200	Enhancers	Primary hematopoietic stem cells	blood
2	chr3:18021000-18023000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:18021000-18023000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:18021800-18027200	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:18022000-18023000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:18022200-18024000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr3:18022200-18027000	Weak transcription	Fetal Heart	heart
8	chr3:18022400-18029600	Enhancers	Thymus	Thymus
9	chr3:18022600-18023000	Flanking Active TSS	Dnd41	blood
10	chr3:18022600-18023200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr3:18022600-18023200	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr3:18022600-18027800	Weak transcription	Fetal Stomach	stomach
13	chr3:18022800-18023000	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr3:18022800-18026600	Enhancers	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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