Variant report

Variant	rs61647180
Chromosome Location	chr3:18050371-18050372
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11915290	1.00[AFR][1000 genomes]
rs11918544	0.90[AFR][1000 genomes]
rs11918876	0.84[AFR][1000 genomes]
rs11922565	0.89[AFR][1000 genomes]
rs11925807	1.00[AFR][1000 genomes]
rs57535465	1.00[AFR][1000 genomes]
rs57982713	0.89[AFR][1000 genomes]
rs59347365	0.93[AFR][1000 genomes]
rs59925373	0.90[AFR][1000 genomes]
rs73160111	0.86[AFR][1000 genomes]
rs73160120	0.90[AFR][1000 genomes]
rs73160121	0.84[AFR][1000 genomes]
rs73160145	0.90[AFR][1000 genomes]
rs73160151	0.90[AFR][1000 genomes]
rs73160153	0.90[AFR][1000 genomes]
rs73160182	0.90[AFR][1000 genomes]
rs73160186	0.90[AFR][1000 genomes]
rs73160188	0.81[AFR][1000 genomes]
rs73160189	0.90[AFR][1000 genomes]
rs73160201	0.87[AFR][1000 genomes]
rs73169999	0.83[AFR][1000 genomes]
rs73171708	1.00[AFR][1000 genomes]
rs73171709	1.00[AFR][1000 genomes]
rs73171728	1.00[AFR][1000 genomes]
rs73171737	1.00[AFR][1000 genomes]
rs73171739	1.00[AFR][1000 genomes]
rs73171744	1.00[AFR][1000 genomes]
rs73171745	1.00[AFR][1000 genomes]
rs73171750	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1807571	chr3:18017246-18057347	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:18046200-18076600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:18047200-18053800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:18048600-18051600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:18049400-18056200	Enhancers	Dnd41	blood
5	chr3:18049800-18051000	Enhancers	Osteobl	bone
6	chr3:18049800-18052000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:18049800-18055000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:18050000-18050800	Enhancers	Adipose Nuclei	Adipose
9	chr3:18050200-18050400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:18050200-18050400	Enhancers	NH-A	brain
11	chr3:18050200-18051400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links