Variant report

Variant	rs73160109
Chromosome Location	chr3:17892217-17892218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11918544	0.86[AFR][1000 genomes]
rs11918876	0.81[AFR][1000 genomes]
rs11922565	0.85[AFR][1000 genomes]
rs57982713	0.85[AFR][1000 genomes]
rs59925373	0.86[AFR][1000 genomes]
rs73160111	0.89[AFR][1000 genomes]
rs73160120	0.86[AFR][1000 genomes]
rs73160121	0.81[AFR][1000 genomes]
rs73160145	0.86[AFR][1000 genomes]
rs73160151	0.86[AFR][1000 genomes]
rs73160153	0.86[AFR][1000 genomes]
rs73160178	0.96[AFR][1000 genomes]
rs73160182	0.86[AFR][1000 genomes]
rs73160186	0.86[AFR][1000 genomes]
rs73160189	0.86[AFR][1000 genomes]
rs73160201	0.83[AFR][1000 genomes]
rs73169999	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17891200-17892600	Enhancers	Placenta	Placenta
2	chr3:17891800-17892800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:17891800-17893200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:17892000-17892400	Enhancers	NHDF-Ad	bronchial
5	chr3:17892000-17892600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:17892200-17892800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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