Variant report
| Variant | rs59344218 |
|---|---|
| Chromosome Location | chr3:17922324-17922325 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:17914461..17916161-chr3:17921301..17923338,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| PDCL3P3 | TF binding region |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11916577 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11923621 | 0.83[AFR][1000 genomes] |
| rs59014243 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59965992 | 0.83[AFR][1000 genomes] |
| rs60489176 | 0.83[AFR][1000 genomes] |
| rs6772103 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6776171 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6780065 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6780156 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6795003 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6797766 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6803185 | 1.00[AMR][1000 genomes] |
| rs6803292 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6806772 | 1.00[AMR][1000 genomes] |
| rs73160124 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73160131 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73160132 | 0.83[AFR][1000 genomes] |
| rs73160137 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73160141 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73160149 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73160152 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73160179 | 0.83[AFR][1000 genomes] |
| rs7620582 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999594 | chr3:17690416-17982318 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:17904200-17936200 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
