Variant report
| Variant | rs6795003 |
|---|---|
| Chromosome Location | chr3:17909800-17909801 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:17909020..17912909-chr3:17926359..17928346,3 | K562 | blood: | |
| 2 | chr3:17909020..17910813-chr3:17925478..17928236,2 | K562 | blood: | |
| 3 | chr3:17901420..17905506-chr3:17906553..17911156,6 | K562 | blood: | |
| 4 | chr3:17907315..17910017-chr3:17911850..17914562,3 | K562 | blood: | |
| 5 | chr3:17906120..17907776-chr3:17908780..17910859,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000213383 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11916424 | 1.00[MEX][hapmap] |
| rs11916577 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11923621 | 0.83[AFR][1000 genomes] |
| rs17043909 | 1.00[MEX][hapmap] |
| rs59014243 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59344218 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59965992 | 0.83[AFR][1000 genomes] |
| rs60489176 | 0.83[AFR][1000 genomes] |
| rs6577629 | 1.00[MEX][hapmap] |
| rs6772103 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6776171 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6780065 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6780156 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6797766 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6803185 | 1.00[AMR][1000 genomes] |
| rs6803292 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6806772 | 1.00[AMR][1000 genomes] |
| rs73160124 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73160131 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73160132 | 0.83[AFR][1000 genomes] |
| rs73160137 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73160141 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73160149 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73160152 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73160179 | 0.83[AFR][1000 genomes] |
| rs7620582 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999594 | chr3:17690416-17982318 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:17903400-17913600 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 2 | chr3:17904200-17936200 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
