Variant report

Variant	rs6808355
Chromosome Location	chr3:25107714-25107715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10510556	0.82[EUR][1000 genomes]
rs1122714	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1603974	0.82[EUR][1000 genomes]
rs17515260	0.83[EUR][1000 genomes]
rs17515622	0.82[EUR][1000 genomes]
rs17787531	0.83[EUR][1000 genomes]
rs60628801	0.95[ASN][1000 genomes]
rs62228517	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62228518	0.82[EUR][1000 genomes]
rs62228519	0.82[EUR][1000 genomes]
rs62228520	0.82[EUR][1000 genomes]
rs62228521	0.82[EUR][1000 genomes]
rs62228538	0.82[EUR][1000 genomes]
rs62228539	0.81[EUR][1000 genomes]
rs6772970	0.82[ASN][1000 genomes]
rs6791615	0.82[ASN][1000 genomes]
rs6798255	0.84[EUR][1000 genomes]
rs73149145	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834644	chr3:24936987-25112610	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv589955	chr3:24987823-25113358	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25099800-25111200	Weak transcription	Fetal Lung	lung
2	chr3:25104600-25112200	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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