Variant report

Variant	rs62228539
Chromosome Location	chr3:25109123-25109124
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10510556	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13327067	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1603974	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17015764	0.80[EUR][1000 genomes]
rs17515260	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17515622	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17787525	0.84[EUR][1000 genomes]
rs17787531	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59663978	0.80[EUR][1000 genomes]
rs62228512	0.85[EUR][1000 genomes]
rs62228516	0.85[EUR][1000 genomes]
rs62228518	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62228519	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62228520	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62228521	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62228538	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62228543	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6808355	0.81[EUR][1000 genomes]
rs7618802	0.81[EUR][1000 genomes]
rs7626290	0.80[EUR][1000 genomes]
rs7652292	0.85[EUR][1000 genomes]
rs949641	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834644	chr3:24936987-25112610	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv589955	chr3:24987823-25113358	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25099800-25111200	Weak transcription	Fetal Lung	lung
2	chr3:25104600-25112200	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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