Variant report

Variant	rs17787525
Chromosome Location	chr3:25082405-25082406
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10510556	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13327067	0.82[EUR][1000 genomes]
rs1603974	0.85[EUR][1000 genomes]
rs17515260	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17515622	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17787531	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62228512	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62228513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62228516	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62228518	0.85[EUR][1000 genomes]
rs62228519	0.85[EUR][1000 genomes]
rs62228520	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62228521	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62228538	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62228539	0.84[EUR][1000 genomes]
rs7652292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs949641	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834644	chr3:24936987-25112610	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv589955	chr3:24987823-25113358	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25070000-25086600	Weak transcription	Left Ventricle	heart
2	chr3:25074200-25083400	Weak transcription	Right Atrium	heart
3	chr3:25075200-25086600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:25079200-25086600	Weak transcription	Fetal Muscle Leg	muscle
5	chr3:25079400-25083400	Weak transcription	Fetal Heart	heart
6	chr3:25079400-25086800	Weak transcription	Aorta	Aorta
7	chr3:25079400-25088400	Weak transcription	Adipose Nuclei	Adipose
8	chr3:25080000-25089000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:25080600-25086600	Weak transcription	Colon Smooth Muscle	Colon
10	chr3:25080800-25085200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:25080800-25086600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:25080800-25086600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr3:25081000-25083600	Weak transcription	Fetal Lung	lung
14	chr3:25081000-25085600	Weak transcription	Fetal Stomach	stomach
15	chr3:25081000-25086000	Weak transcription	Brain Anterior Caudate	brain
16	chr3:25081400-25083800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr3:25081400-25084000	Weak transcription	Psoas Muscle	Psoas
18	chr3:25082200-25084200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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