Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10510556	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13327067	0.96[EUR][1000 genomes]
rs1603975	0.87[ASN][1000 genomes]
rs1603976	0.87[ASN][1000 genomes]
rs17515260	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17515622	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17787525	0.85[EUR][1000 genomes]
rs17787531	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62228512	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62228516	0.87[EUR][1000 genomes]
rs62228518	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62228519	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62228520	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62228521	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62228538	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62228539	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62228543	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6808355	0.82[EUR][1000 genomes]
rs7618802	0.80[EUR][1000 genomes]
rs7652292	0.87[EUR][1000 genomes]
rs949641	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834644	chr3:24936987-25112610	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv589955	chr3:24987823-25113358	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25099800-25101000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:25099800-25111200	Weak transcription	Fetal Lung	lung

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