Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10510556	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13327067	0.94[EUR][1000 genomes]
rs1603974	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17515260	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17515622	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17787525	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62228512	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62228513	0.83[AMR][1000 genomes]
rs62228516	0.88[EUR][1000 genomes]
rs62228518	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62228519	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62228520	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62228521	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62228538	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62228539	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62228543	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6808355	0.83[EUR][1000 genomes]
rs7652292	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs949641	0.88[EUR][1000 genomes]
rs9849661	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834644	chr3:24936987-25112610	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv589955	chr3:24987823-25113358	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17787531	TOP2B	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25087000-25092600	Weak transcription	Fetal Kidney	kidney
2	chr3:25087800-25090600	Weak transcription	Fetal Lung	lung

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