Variant report

Variant	rs6809805
Chromosome Location	chr3:85553096-85553097
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:85513919..85516830-chr3:85552866..85555627,2	K562	blood:
2	chr3:85525792..85532904-chr3:85548163..85554926,11	K562	blood:
3	chr3:85550694..85553715-chr3:85562655..85565189,4	K562	blood:
4	chr3:85551480..85554348-chr3:85623401..85624978,2	K562	blood:
5	chr3:85528291..85540418-chr3:85548148..85554862,16	K562	blood:
6	chr3:85522328..85524379-chr3:85551882..85554402,2	K562	blood:
7	chr3:85439579..85441215-chr3:85551442..85553756,2	K562	blood:
8	chr3:84609476..84611998-chr3:85551707..85553249,2	K562	blood:
9	chr3:84291765..84296920-chr3:85550637..85554814,6	K562	blood:
10	chr3:85503980..85505718-chr3:85553016..85554877,2	K562	blood:
11	chr3:85520722..85524381-chr3:85549502..85554850,5	K562	blood:
12	chr3:84287116..84289415-chr3:85550323..85553207,2	K562	blood:
13	chr3:85486960..85489003-chr3:85551718..85553697,2	K562	blood:
14	chr3:85503835..85505718-chr3:85553016..85554877,3	K562	blood:
15	chr3:85512744..85515419-chr3:85552866..85554640,2	K562	blood:

No data

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10154865	0.87[AMR][1000 genomes]
rs11127891	0.85[EUR][1000 genomes]
rs11712915	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11716233	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12633762	0.85[EUR][1000 genomes]
rs13068434	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13070166	0.90[EUR][1000 genomes]
rs13076830	0.87[AMR][1000 genomes]
rs13077660	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13084531	0.95[EUR][1000 genomes]
rs13092437	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13353478	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1368739	0.85[EUR][1000 genomes]
rs1368740	0.86[EUR][1000 genomes]
rs1375553	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1449404	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2196096	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2196097	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2196098	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35344466	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3887138	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6772991	0.82[EUR][1000 genomes]
rs6808159	0.81[EUR][1000 genomes]
rs71626887	0.80[EUR][1000 genomes]
rs7628948	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650834	0.81[EUR][1000 genomes]
rs9309982	0.85[EUR][1000 genomes]
rs9822731	0.87[AMR][1000 genomes]
rs9826458	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9833314	0.80[EUR][1000 genomes]
rs9838811	0.84[EUR][1000 genomes]
rs9841144	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9844512	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9854869	0.87[AMR][1000 genomes]
rs9865745	0.81[EUR][1000 genomes]
rs9866322	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9866761	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870448	0.87[AMR][1000 genomes]
rs9873400	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1002238	chr3:85357855-85719373	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
4	nsv536619	chr3:85357855-85719373	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
5	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv998829	chr3:85449960-85641099	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv536622	chr3:85449960-85641099	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv526621	chr3:85470642-85667683	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1013601	chr3:85489536-85570465	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv536624	chr3:85489536-85570465	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv1009927	chr3:85497666-85669155	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv2762338	chr3:85520915-85577233	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
15	nsv1009804	chr3:85521984-85581386	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
16	nsv536626	chr3:85527837-85578368	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
17	nsv1002139	chr3:85534559-85630146	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1006433	chr3:85535783-85631667	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv590906	chr3:85539816-85626054	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv1008269	chr3:85544536-85617198	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv536627	chr3:85544536-85617198	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv527642	chr3:85551353-85619451	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85545000-85569000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:85550400-85557200	Active TSS	K562	blood
3	chr3:85552800-85554800	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr3:85553000-85554800	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr3:85553000-85554800	Active TSS	iPS-15b Cell Line	embryonic stem cell

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