Variant report

Variant	rs9841144
Chromosome Location	chr3:85531199-85531200
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:85528291..85540418-chr3:85548148..85554862,16	K562	blood:
2	chr3:85525792..85532904-chr3:85548163..85554926,11	K562	blood:

Extended variants
information (count: 83 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10154865	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10433498	0.83[EUR][1000 genomes]
rs11127891	0.89[EUR][1000 genomes]
rs11712915	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11713902	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11716233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12498010	0.91[CEU][hapmap]
rs12633762	0.89[EUR][1000 genomes]
rs12714629	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs13068434	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13070166	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13076830	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13077660	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes]
rs13084531	0.90[EUR][1000 genomes]
rs13085170	0.81[EUR][1000 genomes]
rs13092437	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13353478	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes]
rs1368739	0.89[EUR][1000 genomes]
rs1368740	0.90[EUR][1000 genomes]
rs1368743	0.84[EUR][1000 genomes]
rs1375547	0.88[GIH][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap]
rs1375553	0.82[EUR][1000 genomes]
rs1433711	0.80[EUR][1000 genomes]
rs1449404	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1821349	0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs2117151	0.81[CEU][hapmap]
rs2196096	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2196097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2196098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2326313	0.84[EUR][1000 genomes]
rs35344466	0.85[EUR][1000 genomes]
rs3887138	0.87[EUR][1000 genomes]
rs6772991	0.86[EUR][1000 genomes]
rs6808159	0.85[EUR][1000 genomes]
rs6809805	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71626887	0.84[EUR][1000 genomes]
rs7628948	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7650834	0.85[EUR][1000 genomes]
rs9309977	0.84[EUR][1000 genomes]
rs9309981	0.91[TSI][hapmap]
rs9309982	0.92[TSI][hapmap];0.89[EUR][1000 genomes]
rs9810724	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs9814516	0.91[CEU][hapmap]
rs9814919	0.81[EUR][1000 genomes]
rs9819476	1.00[ASW][hapmap];1.00[CHD][hapmap]
rs9819830	0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs9820228	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs9822731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9826458	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes]
rs9833314	0.84[EUR][1000 genomes]
rs9834708	1.00[CHD][hapmap]
rs9838811	0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs9844512	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9851444	0.88[CEU][hapmap]
rs9854869	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9863620	0.83[EUR][1000 genomes]
rs9865745	0.85[EUR][1000 genomes]
rs9866322	0.86[EUR][1000 genomes]
rs9866761	0.86[EUR][1000 genomes]
rs9870448	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9873400	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9879025	0.84[EUR][1000 genomes]
rs9880397	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9880919	0.94[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1002238	chr3:85357855-85719373	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
4	nsv536619	chr3:85357855-85719373	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
5	nsv590904	chr3:85438564-85551403	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv998829	chr3:85449960-85641099	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv536622	chr3:85449960-85641099	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv526621	chr3:85470642-85667683	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1009512	chr3:85472690-85533487	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv536623	chr3:85472690-85533487	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
12	nsv1013601	chr3:85489536-85570465	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv536624	chr3:85489536-85570465	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv1009927	chr3:85497666-85669155	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv2762338	chr3:85520915-85577233	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
18	nsv1009804	chr3:85521984-85581386	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
19	nsv536626	chr3:85527837-85578368	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

Variant related diseases (count:1)

Disease	PMID	Source
Longevity (90 years and older)	25199915	GWAS catalog

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85519200-85536800	Weak transcription	Fetal Brain Male	brain
2	chr3:85530400-85531400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:85530600-85531400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:85530600-85531400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr3:85530600-85531400	Active TSS	Brain Angular Gyrus	brain
6	chr3:85530600-85531600	Active TSS	Brain Substantia Nigra	brain
7	chr3:85530600-85531800	Active TSS	Psoas Muscle	Psoas
8	chr3:85530800-85531200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:85530800-85531200	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr3:85530800-85531200	Active TSS	Osteobl	bone
11	chr3:85530800-85531400	Active TSS	Brain Anterior Caudate	brain
12	chr3:85530800-85531800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
13	chr3:85531000-85531600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:85531000-85531600	Active TSS	A549	lung
15	chr3:85531000-85531800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:85531000-85531800	Enhancers	Adipose Nuclei	Adipose
17	chr3:85531000-85531800	Active TSS	Brain Hippocampus Middle	brain
18	chr3:85531000-85534600	Weak transcription	HSMM	muscle

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