Variant report

Variant	rs13070166
Chromosome Location	chr3:85517507-85517508
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:85516644..85518723-chr3:85527589..85529747,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10154865	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10433498	0.84[EUR][1000 genomes]
rs11127891	0.90[EUR][1000 genomes]
rs11712915	0.82[EUR][1000 genomes]
rs11716233	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12498010	0.80[EUR][1000 genomes]
rs12633762	0.90[EUR][1000 genomes]
rs13068434	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13076830	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13077660	0.82[EUR][1000 genomes]
rs13084531	0.85[EUR][1000 genomes]
rs13085170	0.82[EUR][1000 genomes]
rs13092437	0.82[EUR][1000 genomes]
rs13099750	0.80[EUR][1000 genomes]
rs13353478	0.82[EUR][1000 genomes]
rs1368739	0.90[EUR][1000 genomes]
rs1368740	0.91[EUR][1000 genomes]
rs1368743	0.84[EUR][1000 genomes]
rs1433711	0.81[EUR][1000 genomes]
rs1449404	0.81[EUR][1000 genomes]
rs1821349	0.83[EUR][1000 genomes]
rs2196096	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2196097	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2196098	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2326313	0.84[EUR][1000 genomes]
rs35344466	0.81[EUR][1000 genomes]
rs3887138	0.82[EUR][1000 genomes]
rs4279114	0.82[EUR][1000 genomes]
rs6772991	0.87[EUR][1000 genomes]
rs6808159	0.86[EUR][1000 genomes]
rs6809805	0.90[EUR][1000 genomes]
rs71626887	0.85[EUR][1000 genomes]
rs7628948	0.81[EUR][1000 genomes]
rs7650834	0.86[EUR][1000 genomes]
rs9309977	0.84[EUR][1000 genomes]
rs9309982	0.90[EUR][1000 genomes]
rs9814919	0.82[EUR][1000 genomes]
rs9819830	0.82[EUR][1000 genomes]
rs9822731	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9826458	0.82[EUR][1000 genomes]
rs9833314	0.85[EUR][1000 genomes]
rs9838811	0.91[EUR][1000 genomes]
rs9841144	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9844512	0.92[EUR][1000 genomes]
rs9854869	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9863620	0.84[EUR][1000 genomes]
rs9865191	0.82[EUR][1000 genomes]
rs9865745	0.86[EUR][1000 genomes]
rs9866322	0.81[EUR][1000 genomes]
rs9866761	0.81[EUR][1000 genomes]
rs9870448	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9873400	0.85[EUR][1000 genomes]
rs9879025	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1002238	chr3:85357855-85719373	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
4	nsv536619	chr3:85357855-85719373	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
5	nsv590904	chr3:85438564-85551403	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv998829	chr3:85449960-85641099	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv536622	chr3:85449960-85641099	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv526621	chr3:85470642-85667683	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1009512	chr3:85472690-85533487	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv536623	chr3:85472690-85533487	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
12	nsv1013601	chr3:85489536-85570465	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv536624	chr3:85489536-85570465	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv1009927	chr3:85497666-85669155	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85512600-85522400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:85513000-85526000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:85517400-85518200	Enhancers	K562	blood

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