Variant report

Variant	rs13099750
Chromosome Location	chr3:85410088-85410089
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:84597130..84597691-chr3:85409635..85410581,3	MCF-7	breast:
2	chr3:85353291..85354669-chr3:85409554..85410988,3	K562	blood:
3	chr3:85353413..85354226-chr3:85409666..85410591,2	MCF-7	breast:
4	chr3:85023240..85023756-chr3:85409642..85410352,2	MCF-7	breast:
5	chr3:85409636..85410536-chr3:85624933..85625875,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10154865	0.94[EUR][1000 genomes]
rs10433498	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11127891	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11705775	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11716233	0.81[EUR][1000 genomes]
rs12493423	0.90[ASN][1000 genomes]
rs12498010	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12633762	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12714625	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13068434	0.81[EUR][1000 genomes]
rs13070166	0.80[EUR][1000 genomes]
rs13076632	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13076830	0.94[EUR][1000 genomes]
rs13085170	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1368739	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1368740	0.84[EUR][1000 genomes]
rs1368743	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1433711	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1821349	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2163972	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2196096	0.86[EUR][1000 genomes]
rs2196097	0.86[EUR][1000 genomes]
rs2196098	0.81[EUR][1000 genomes]
rs2326313	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3887151	0.90[ASN][1000 genomes]
rs4279114	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6772991	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6808159	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71626887	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7650834	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9309977	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9309982	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9809258	0.97[ASN][1000 genomes]
rs9814516	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9814919	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9819830	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9822731	0.95[EUR][1000 genomes]
rs9824178	0.84[AMR][1000 genomes]
rs9833314	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9838811	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9854869	0.95[EUR][1000 genomes]
rs986035	0.88[ASN][1000 genomes]
rs9861237	0.90[ASN][1000 genomes]
rs9861451	0.84[AMR][1000 genomes]
rs9863620	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9865191	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9865745	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9870448	0.95[EUR][1000 genomes]
rs9879025	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1012601	chr3:85246185-85426996	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv536618	chr3:85246185-85426996	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv948806	chr3:85304744-85463443	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1013407	chr3:85307022-85460325	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
7	nsv870153	chr3:85326695-85426936	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1002238	chr3:85357855-85719373	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
9	nsv536619	chr3:85357855-85719373	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1008956	chr3:85394816-85460325	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
11	nsv536620	chr3:85394816-85460325	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1004254	chr3:85394816-85514910	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
13	nsv536621	chr3:85394816-85514910	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85404600-85410400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:85408400-85410200	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:85409800-85410200	Flanking Active TSS	Brain Anterior Caudate	brain
4	chr3:85409800-85410200	Enhancers	Fetal Brain Female	brain
5	chr3:85409800-85410400	Enhancers	Brain Angular Gyrus	brain
6	chr3:85409800-85411000	Enhancers	Brain Cingulate Gyrus	brain
7	chr3:85409800-85411000	Enhancers	Brain Substantia Nigra	brain

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