Variant report

Variant	rs9838811
Chromosome Location	chr3:85512824-85512825
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:85510932..85513927-chr3:85533761..85535530,2	K562	blood:
2	chr3:85512744..85515419-chr3:85552866..85554640,2	K562	blood:
3	chr3:85512384..85516287-chr3:85548853..85551591,3	K562	blood:
4	chr3:85510863..85513429-chr3:85513950..85516943,2	MCF-7	breast:

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs1025531	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[YRI][hapmap]
rs1030721	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[YRI][hapmap]
rs10433498	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10511085	0.85[CHB][hapmap]
rs11127890	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[YRI][hapmap]
rs11127891	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11127892	0.82[CHB][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes]
rs11716233	0.92[EUR][1000 genomes]
rs12054398	0.82[CHB][hapmap];0.86[YRI][hapmap]
rs12485813	0.82[CHB][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes]
rs12486203	0.85[YRI][hapmap]
rs12486274	0.82[CHB][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes]
rs12487886	0.85[YRI][hapmap]
rs12488750	0.82[CHB][hapmap];0.86[YRI][hapmap]
rs12491967	0.93[YRI][hapmap]
rs12493440	0.84[YRI][hapmap]
rs12493645	0.82[CHB][hapmap];0.81[CHD][hapmap];0.87[LWK][hapmap];0.93[YRI][hapmap]
rs12495242	0.86[YRI][hapmap]
rs12498010	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12633762	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12634226	0.82[CHB][hapmap]
rs12637214	0.82[CHB][hapmap]
rs12637236	0.82[CHB][hapmap]
rs12638154	0.82[CHB][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes]
rs12638296	0.82[CHB][hapmap]
rs12638482	0.85[CHB][hapmap]
rs12639409	0.82[CHB][hapmap]
rs12714625	0.82[MEX][hapmap]
rs13068434	0.92[EUR][1000 genomes]
rs13070166	0.91[EUR][1000 genomes]
rs13076632	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13077660	0.88[TSI][hapmap]
rs13085170	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13099750	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1368739	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1368740	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1368743	0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1375547	0.86[TSI][hapmap]
rs1433711	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1542248	0.85[CHB][hapmap]
rs1549979	0.85[CHB][hapmap]
rs17023022	0.82[CHB][hapmap];0.81[CHD][hapmap]
rs1821349	0.92[ASW][hapmap];0.92[CEU][hapmap];0.90[GIH][hapmap];0.92[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1865250	0.85[CHB][hapmap]
rs1865251	0.85[CHB][hapmap]
rs1865252	0.85[CHB][hapmap]
rs1991872	0.85[CHB][hapmap]
rs2029130	0.82[CHB][hapmap]
rs2053108	0.85[CHB][hapmap]
rs2069123	0.85[CHB][hapmap]
rs2082556	0.85[CHB][hapmap]
rs2117151	0.86[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap]
rs2117153	0.85[CHB][hapmap]
rs2163972	0.82[MEX][hapmap]
rs2196096	0.88[TSI][hapmap];0.88[EUR][1000 genomes]
rs2196097	0.88[EUR][1000 genomes]
rs2196098	0.92[EUR][1000 genomes]
rs2326309	0.85[CHB][hapmap]
rs2326313	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28655875	0.85[CHB][hapmap]
rs35827242	0.85[CHB][hapmap]
rs4279114	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4856572	0.85[CHB][hapmap]
rs6549024	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[YRI][hapmap]
rs6767245	0.82[CHB][hapmap];0.81[CHD][hapmap];0.86[YRI][hapmap]
rs6767256	0.82[CHB][hapmap];0.86[YRI][hapmap]
rs6767921	0.82[CHB][hapmap];0.86[YRI][hapmap]
rs6772991	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6780968	0.85[CHB][hapmap]
rs6791938	0.82[CHB][hapmap];0.86[YRI][hapmap]
rs6808159	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6809805	0.84[EUR][1000 genomes]
rs71626887	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7609594	0.85[CHB][hapmap]
rs7614148	0.85[CHB][hapmap]
rs7627971	0.82[MEX][hapmap]
rs7628948	0.88[TSI][hapmap]
rs7650834	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs919874	0.82[CHB][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes]
rs9309977	0.92[CEU][hapmap];0.93[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9309981	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];0.84[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap]
rs9309982	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812845	0.81[CHD][hapmap];0.81[MEX][hapmap]
rs9814516	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9814919	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9819830	0.85[ASW][hapmap];0.92[CEU][hapmap];0.90[GIH][hapmap];0.83[LWK][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];0.91[TSI][hapmap];0.87[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9822731	0.83[TSI][hapmap]
rs9833314	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9841144	0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs9844512	0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs9863620	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9865191	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9865745	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9879025	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9880919	0.92[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.92[LWK][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.93[YRI][hapmap]
rs993136	0.85[CHB][hapmap]
rs993137	0.85[CHB][hapmap]
rs993716	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1002238	chr3:85357855-85719373	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
4	nsv536619	chr3:85357855-85719373	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1004254	chr3:85394816-85514910	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
6	nsv536621	chr3:85394816-85514910	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
7	nsv590904	chr3:85438564-85551403	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv998829	chr3:85449960-85641099	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv536622	chr3:85449960-85641099	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv526621	chr3:85470642-85667683	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1009512	chr3:85472690-85533487	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv536623	chr3:85472690-85533487	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv1013601	chr3:85489536-85570465	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
15	nsv536624	chr3:85489536-85570465	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
16	nsv1009927	chr3:85497666-85669155	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85512200-85513000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:85512600-85522400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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