Variant report

Variant	rs6812579
Chromosome Location	chr4:106735852-106735853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17036260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56924509	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57357762	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6827293	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6832006	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6841297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6842870	0.93[AFR][1000 genomes]
rs6850604	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72956940	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72960918	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72960924	0.93[AFR][1000 genomes]
rs72969249	1.00[AMR][1000 genomes]
rs72969253	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72969275	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7666495	1.00[AMR][1000 genomes]
rs7671981	0.84[AFR][1000 genomes]
rs7691960	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879700	chr4:106643445-106745057	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106695200-106757000	Weak transcription	Primary B cells from cord blood	blood
2	chr4:106703200-106755600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:106724200-106736400	Weak transcription	Ovary	ovary
4	chr4:106729200-106763400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:106730200-106764200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:106730400-106738800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:106730400-106756400	Weak transcription	Fetal Stomach	stomach
8	chr4:106730400-106757600	Weak transcription	Psoas Muscle	Psoas
9	chr4:106730800-106736200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:106730800-106761800	Weak transcription	HSMM	muscle
11	chr4:106732600-106755800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:106734400-106756400	Weak transcription	Fetal Thymus	thymus
13	chr4:106734800-106746600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:106735800-106747800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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