Variant report

Variant	rs7691960
Chromosome Location	chr4:106688355-106688356
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106683001..106684597-chr4:106687695..106689266,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10026373	1.00[EUR][1000 genomes]
rs12331437	1.00[EUR][1000 genomes]
rs17036260	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28421902	1.00[EUR][1000 genomes]
rs56924509	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57357762	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6812579	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6827293	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6832006	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6841297	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6842870	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6850604	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72956940	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72960918	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72960924	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72969249	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72969253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72969275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7666495	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7671981	0.98[AFR][1000 genomes]
rs7696673	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv879700	chr4:106643445-106745057	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1000947	chr4:106651153-106701679	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106634000-106693200	Weak transcription	K562	blood
2	chr4:106659600-106691800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:106661600-106696800	Weak transcription	Fetal Intestine Small	intestine
4	chr4:106663800-106688600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr4:106685200-106688800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr4:106685400-106700000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:106686400-106696800	Weak transcription	Fetal Stomach	stomach
8	chr4:106686600-106689200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:106687000-106698400	Weak transcription	Fetal Lung	lung
10	chr4:106687200-106689000	Enhancers	HMEC	breast
11	chr4:106687200-106689400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:106687400-106688400	Enhancers	NHLF	lung
13	chr4:106687400-106696800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:106687600-106690400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr4:106687600-106691800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:106687600-106692000	Weak transcription	NHEK	skin
17	chr4:106687600-106696800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr4:106687600-106697200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr4:106687800-106699600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:106688200-106688400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr4:106688200-106688400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:106688200-106688400	Enhancers	NHDF-Ad	bronchial
23	chr4:106688200-106689200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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