Variant report

Variant	rs72956940
Chromosome Location	chr4:106670493-106670494
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10026373	1.00[EUR][1000 genomes]
rs12331437	1.00[EUR][1000 genomes]
rs17036260	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28421902	1.00[EUR][1000 genomes]
rs56924509	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57357762	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6812579	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6827293	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6832006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6841297	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6842870	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6850604	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72960918	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72960924	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72969249	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72969253	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72969275	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7666495	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7671981	0.95[AFR][1000 genomes]
rs7691960	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7696673	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv879700	chr4:106643445-106745057	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1000947	chr4:106651153-106701679	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106634000-106693200	Weak transcription	K562	blood
2	chr4:106659400-106679400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr4:106659400-106686400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:106659600-106671000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:106659600-106691800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:106659800-106671800	Weak transcription	Fetal Brain Female	brain
7	chr4:106660200-106671200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr4:106661400-106676200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:106661400-106686600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:106661400-106686600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr4:106661600-106696800	Weak transcription	Fetal Intestine Small	intestine
12	chr4:106661800-106675800	Weak transcription	Primary B cells from cord blood	blood
13	chr4:106663800-106688600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr4:106666400-106671400	Weak transcription	HMEC	breast
15	chr4:106666600-106673000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr4:106668400-106673000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr4:106668600-106679800	Weak transcription	Brain Hippocampus Middle	brain
18	chr4:106669400-106671000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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