Variant report

Variant	rs6842870
Chromosome Location	chr4:106782421-106782422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10026373	1.00[EUR][1000 genomes]
rs12331437	1.00[EUR][1000 genomes]
rs17036260	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28421902	1.00[EUR][1000 genomes]
rs56924509	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6812579	0.93[AFR][1000 genomes]
rs6827293	0.81[AFR][1000 genomes]
rs6832006	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6841297	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6850604	0.83[AFR][1000 genomes]
rs72956940	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72960918	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72960924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72969253	0.83[AFR][1000 genomes]
rs72969275	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7671981	0.81[AFR][1000 genomes]
rs7691960	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7696673	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830028	chr4:106769299-106801806	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1797065	chr4:106769322-106799532	Enhancers Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106779600-106783600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:106781800-106782600	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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