Variant report

Variant	rs6814188
Chromosome Location	chr4:47019621-47019622
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13116355	0.80[CEU][hapmap]
rs13152751	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2236781	0.80[YRI][hapmap]
rs4315750	0.92[JPT][hapmap]
rs4317179	0.85[CHD][hapmap];0.92[JPT][hapmap]
rs4521322	0.91[ASN][1000 genomes]
rs4597805	0.84[JPT][hapmap]
rs6829206	1.00[JPT][hapmap]
rs6846701	0.92[JPT][hapmap]
rs7659639	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs993776	0.82[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6814188	VWA3B	trans	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47013600-47028600	Weak transcription	Fetal Heart	heart
2	chr4:47019200-47019800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:47019200-47019800	Enhancers	Fetal Lung	lung
4	chr4:47019200-47020000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:47019200-47020800	Enhancers	Osteobl	bone
6	chr4:47019400-47020400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:47019600-47019800	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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