Variant report

Variant	rs68164717
Chromosome Location	chr13:53536583-53536584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11617841	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12867633	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12876856	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34858262	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35082723	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7319859	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7320575	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7321464	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7321816	0.89[EUR][1000 genomes]
rs7326351	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7327967	0.80[EUR][1000 genomes]
rs9536321	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9536322	0.96[EUR][1000 genomes]
rs9536327	0.81[EUR][1000 genomes]
rs9591484	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9596733	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53532800-53541000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:53533800-53540800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:53534400-53536600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr13:53534600-53538000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr13:53534800-53539000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr13:53535000-53536600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr13:53535000-53536600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr13:53535000-53538600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr13:53535200-53536600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr13:53535600-53536800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:53536200-53537800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr13:53536400-53536600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
13	chr13:53536400-53537600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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