Variant report

Variant	rs9536327
Chromosome Location	chr13:53551521-53551522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11617841	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs11618509	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11618720	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11618738	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12867633	0.80[EUR][1000 genomes]
rs12876856	0.81[EUR][1000 genomes]
rs1323112	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1555559	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1578872	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34858262	0.82[EUR][1000 genomes]
rs35082723	0.82[EUR][1000 genomes]
rs6561700	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6561701	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6561702	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs68164717	0.81[EUR][1000 genomes]
rs7319859	0.82[EUR][1000 genomes]
rs7320575	0.82[EUR][1000 genomes]
rs7321464	0.82[EUR][1000 genomes]
rs7326351	0.82[EUR][1000 genomes]
rs7327967	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7996239	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9316600	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9316602	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9536321	0.81[EUR][1000 genomes]
rs9536322	0.84[EUR][1000 genomes]
rs9568783	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9568784	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9568785	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9591484	0.81[EUR][1000 genomes]
rs9596733	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs986338	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53539200-53553200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr13:53549600-53553200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:53550400-53552600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:53551200-53552000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links